DADA2 formatted 16S rRNA gene sequences for both bacteria
Oct 24, 2024 · The bacterial and archaeal 16S rRNA gene sequence databases were collated from various sources and formatted to use the "assignTaxonomy" command within the DADA2 pipeline. …
SILVA v138.2 dada2 formatted 18S 'train sets' for fungi, beta version
Mar 18, 2025 · I have created these trainsets from SILVA 138.2 (https://www.arb-silva.de/no_cache/download/archive/release_138_2/Exports/) and formatted them for use with dada2.
Silva taxonomic training data formatted for DADA2 (Silva ... - Zenodo
Feb 13, 2018 · These DADA2-formatted training fasta files were derived from the Silva Project's version 132 release.
Silva taxonomic training data formatted for DADA2 (Silva ... - Zenodo
Nov 15, 2024 · These DADA2-formatted training fasta files were derived from the Silva Project's version 138.2 release: https://www.arb-silva.de/ These fastas were generated by the following commands …
Tara Mission Microbiomes metabarcoding 18S V4 ASVs (dada2)
Apr 30, 2025 · This repository contains datasets describing the DADA2 ASVs generated from Tara Mission Microbiomes 18S V4 rDNA MM-OMICS data. The ASVs were generated using the nf-core …
SILVA v138.2 dada2 formatted 26S 'train sets' for fungi, beta version
Mar 18, 2025 · I have created these trainsets from SILVA 138.2 (https://www.arb-silva.de/no_cache/download/archive/release_138_2/Exports/) and formatted them for use with dada2.
RDP taxonomic training data formatted for DADA2 (RDP release 19 ...
Nov 15, 2024 · These DADA2-formatted training fasta files were derived from the Ribosomal Database Project's Training Set 19 and the 2023-08-23 release of the RDP database. …
DADA2 formatted 16S rRNA gene sequences for both bacteria
Dec 19, 2020 · These two combined bacterial and archaeal 16S rRNA gene sequence databases were collated from various sources and formatted for the purpose of using the "assignTaxonomy" …
Silva 138.1 prokaryotic SSU taxonomic training data formatted for DADA2
Mar 7, 2021 · These training fasta files are derived from the Silva Project's version 138.1 release and formatted for use with DADA2. These files are intended for use in classifying prokaryotic 16S …
rDNA 18S V9 ASVs (DADA2) from the Tara Pacific Expedition - Zenodo
Sep 25, 2024 · This repository contains datasets describing the DADA2 ASVs generated from the Tara Pacific expedition V9 18S rDNA metabarcoding sequencing data. The ASVs were generated were …